FTP:
data Download
Archaeplastida/
Bacteria/
Chromalveolate/
Fungi/
Metazoa /
routinetree Download
Manual Download：
HGTstart_Routinetree_introduction.pdf 227kb
Software Download:
routinetree_Linux.tar.gz/routinetree_macOS.tar.gz
Database (REFAL) Download:
database.tar.gz
Example Download:
example.tar.gz
You can download the latest version of the Routinetree pipeline (for macOS or Linux) and the background database REFAL.
To decompress and set up the routinetree software package, which includes FastTree, blastp, diamond, hmmscan, iqtree, trimal, and muscle, you can follow these steps.
# Decompress the routinetree_Linux.tar.gz file
tar -zxvf routinetree_Linux.tar.gz
# Move the database.tar.gz file into the newly created routinetree_Linux directory
mv database.tar.gz routinetree_Linux/
# Change directory to routinetree_Linux
cd routinetree_Linux
# Decompress the database.tar.gz file (This may take some time due to its size)
tar -zxvf database.tar.gz
cd database
tar –zxvf *tar.gz
cd ..
# Optionally, remove the database.tar.gz file to save space if you no longer need it
rm database.tar.gz